Software

Discover, use and contribute to the Open Source software we develop at github.com/MindTheGap-ERC.

Stratigraphic forward models

CarboKitten.jl

3D stratigraphic model of tropical carbonate platforms with biological self-organization, developed in Julia

CarboCAT Lite

3D stratigraphic model of tropical carbonate platforms with biological self-organization, originally developed by Peter Burgess in MATLAB and modified by us

Reactive-transport models of formation of limestone-marl alternations

marlpde

Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in Python using py-pde

rhythmite

Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in Python, made for our project by Cedric Thieulot and Charlotte Summers

marlpde in FORTRAN

Reactive-transport model simulating formation of limestone-marl alternations: original implementation of the model by L’Heureux (2018) in FORTRAN, with various corrections by ourselves

LMA-Matlab

Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in MATLAB

This package is not developed anymore. Please check the implementations in open languages.

Nature of the stratigraphic record

admtools

R package to estimate age-depth models from stratigraphic and sedimentological data, and transform complex data between the time and stratigraphic domain

StratPal

R package for Stratigraphic Paleobiology

PartiMoDe

Modeling Particle Movement and Destruction in the sediment surface mixed layer

Education

Shellbed Condensator

Shiny app visualizing the effects of sedimentary condensation

Darwin CAT

Shiny app visualizing the effects of carbonate stratigraphy on trait evolution.