Software
Discover, use and contribute to the Open Source software we develop at github.com/MindTheGap-ERC.
Stratigraphic forward models
CarboKitten.jl
3D stratigraphic model of tropical carbonate platforms with biological self-organization, developed in Julia
CarboCAT Lite
3D stratigraphic model of tropical carbonate platforms with biological self-organization, originally developed by Peter Burgess in MATLAB and modified by us
Reactive-transport models of formation of limestone-marl alternations
marlpde
Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in Python using py-pde
rhythmite
Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in Python, made for our project by Cedric Thieulot and Charlotte Summers
marlpde in FORTRAN
Reactive-transport model simulating formation of limestone-marl alternations: original implementation of the model by L’Heureux (2018) in FORTRAN, with various corrections by ourselves
LMA-Matlab
Reactive-transport model simulating formation of limestone-marl alternations: re-implementation of the model by L’Heureux (2018) in MATLAB
This package is not developed anymore. Please check the implementations in open languages.
Nature of the stratigraphic record
admtools
R package to estimate age-depth models from stratigraphic and sedimentological data, and transform complex data between the time and stratigraphic domain
StratPal
R package for Stratigraphic Paleobiology
PartiMoDe
Modeling Particle Movement and Destruction in the sediment surface mixed layer
Education
Shellbed Condensator
Shiny app visualizing the effects of sedimentary condensation
Darwin CAT
Shiny app visualizing the effects of carbonate stratigraphy on trait evolution.