Package index • admtools

All functions

CarboCATLite_data: Example data from CarboCATLite

L_axis_lab(): plot height axis label

T_axis_lab(): plot time axis label

add_adm_to_multiadm(): add adm object ot multiadm object

adm_to_ddc(): construct depth-depth curve from age-depth models

anchor(): anchor age-depth model

condensation(): condensation with height

condensation_fun(): condensation function

flip_ddc(): reverse direction of depth-depth curve

flux_const(): constant deterministic tracer flux

flux_linear(): linear deterministic tracer flux

flux_quad(): quadratic deterministic tracer flux

get_L_tp(): get height/length tie point

get_L_unit(): extract length unit

get_L_units(): extract length units

get_T_tp(): extract time tie points

get_T_unit(): extract Time unit

get_completeness() get_incompleteness(): Determine stratigraphic (in)completeness

get_data_from_eTimeOpt(): extract data from eTimeOpt results

get_height(): determine stratigraphic height deposited at specific time

get_hiat_duration(): extract hiatus duration

get_hiat_list(): extract hiatus info

get_hiat_no(): get no. of hiatuses

get_hiat_pos(): get hiatus positions

get_section_names(): get section names from depth-depth curve

get_time(): Determine times based on age-depth model

get_total_duration(): Total duration covered

get_total_thickness(): get total thickness

get_total_thicknesses(): get thicknesses of sections from depth-depth curves

is_adm(): Is an adm object a valid age-depth model

is_destructive(): Is deposition destructive?

is_multiadm(): is valid multiadm object?

is_sac(): is valid sac objects

make_legend(): plot legend

max_height(): get highest stratigraphic tie point

max_time(): last time tie point

mean_adm(): get mean ADM

median_adm(): get median ADM

merge_adm_to_multiadm(): combine multiple adm ojects into multiadm object

merge_multiadm(): merge multiple multiadm objects

min_height(): get lowest stratigraphic tie point

min_time(): first time tie point

plot(<adm>): plotting adm objects

plot(<ddc>): plot depth-depth curve

plot(<multiadm>): plot multiadm object

plot(<sac>): plot sediment accumulation curve

plot(<stratlist>): plot strat list

plot(<timelist>): plot time lists

plot_condensation(): plot condensation in height

plot_erosive_intervals(): mark erosive time intervals

plot_sed_rate_l(): plot sed. rate in height

plot_sed_rate_t(): plot sedimentation rate in time

quantile_adm(): get quantile ADM

rev_dir(): reverse direction of time/depth axis

sac_to_adm(): turn sed. acc curve into adm

sed_rate_from_matrix(): make sed rate gen from matrix

sed_rate_gen_from_bounds(): seg rate gen from upper/lower bounds

sed_rate_gen_gamma(): sed. rate gen based on gamma distribution

sed_rate_l(): sedimentation rate in stratigraphic height

sed_rate_l_fun(): sed rate in height function

sed_rate_t(): sedimentation rate in time domain

sed_rate_t_fun(): sedimentation rate function

sedrate_to_multiadm(): Estimate age-depth model from sedimentation rates & tie points

set_L_unit(): set length units

set_L_units(): set length units

set_T_unit(): set time units

set_section_names(): set section names for depth-depth curves

split_multiadm(): split multiadm objects into adm

strat_cont_gen_from_tracer(): proxy values in strat domain

strat_cont_to_multiadm(): estimate age-depth model from tracer

strat_to_time(): transform objects from strat. to time domain

strat_to_time(<fossils>): transform fossils object from FossilSim between time and strat domain

strat_to_time(<list>): transform list from height to time domain

strat_to_time(<numeric>): transform numeric vectors from height to time domain

strat_to_time(<phylo>): transform phylo object

strat_to_time(<taxonomy>): transform taxonomy object from strat to time domain

summary(<adm>): summary of age-depth model

summary(<ddc>): summary of depth-depth curve

summary(<multiadm>): summary of age-depth model

summary(<sac>): summary of sediment accumulation curve

time_to_strat(): transform objects from time domain to strat. domain

time_to_strat(<fossils>): transform fossils from FossilSim from time to strat domain

time_to_strat(<list>): transform list from time to height domain

time_to_strat(<numeric>): transform vectors from time to height domain

time_to_strat(<phylo>): transform phylo object

time_to_strat(<taxonomy>): transform taxomony from time to strat domain

timetree: example time tree

tp_height_det(): deterministic tie points height domain

tp_time_det(): deterministic tie points in time domain

tp_time_floating_scale(): tie points for floating time scale

tp_time_norm(): time tie points with normal distribution

tp_to_adm(): Construct age-depth model from tie points

tp_to_ddc(): construct depth-depth curve from coeval heights

tp_to_sac(): define sed. acc. curve